VectorValues documentation and interface cleanup, additional unit tests and bug fix.
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@ -121,8 +121,17 @@ VectorValues VectorValues::SameStructure(const VectorValues& other) {
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return ret;
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}
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/* ************************************************************************* */
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VectorValues VectorValues::Zero(Index nVars, size_t varDim) {
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VectorValues ret(nVars, varDim);
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ret.vector() = Vector::Zero(ret.dim());
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return ret;
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}
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/* ************************************************************************* */
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bool VectorValues::hasSameStructure(const VectorValues& other) const {
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if(this->size() != other.size())
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return false;
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for(size_t j=0; j<size(); ++j)
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if(this->dim(j) != other.dim(j))
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return false;
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@ -27,8 +27,8 @@
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namespace gtsam {
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/**
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* This class stores a collection of vector-valued variables, each referenced
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* by a unique variable index. It is typically used to store the variables
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* This class represents a collection of vector-valued variables associated
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* each with a unique integer index. It is typically used to store the variables
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* of a GaussianFactorGraph. Optimizing a GaussianFactorGraph or GaussianBayesNet
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* returns this class.
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*
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@ -41,11 +41,16 @@ namespace gtsam {
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* - \ref exists (Index) to check if a variable is present
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* - Other facilities like iterators, size(), dim(), etc.
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*
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* Indices can be non-consecutive and inserted out-of-order, but you should not
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* use indices that are larger than a reasonable array size because the indices
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* correspond to positions in an internal array.
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*
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* Example:
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* \code
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VectorValues values;
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values.insert(0, Vector_(3, 5.0, 6.0, 7.0));
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values.insert(1, Vector_(2, 3.0, 4.0));
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values.insert(3, Vector_(3, 1.0, 2.0, 3.0));
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values.insert(4, Vector_(2, 4.0, 5.0));
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values.insert(0, Vector_(4, 6.0, 7.0, 8.0, 9.0));
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// Prints [ 3.0 4.0 ]
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gtsam::print(values[1]);
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@ -55,15 +60,24 @@ namespace gtsam {
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gtsam::print(values[1]);
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\endcode
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*
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* Internally, this class stores all vectors as part of one large vector. This is
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* necessary for performance, and the gtsam linear solving code exploits it by
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* only allocating one large vector to store the solution. For advanced usage,
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* or where speed is important, be aware of the following:
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* - It is faster to allocate space ahead of time using a pre-allocating constructor
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* or the resize() and append() functions, than to use insert(Index, const Vector&),
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* which always has to re-allocate the internal vector.
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* - The vector() function permits access to the underlying Vector.
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* - operator[]() returns a SubVector view of the underlying Vector.
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* <h2>Advanced Interface and Performance Information</h2>
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*
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* Internally, all vector values are stored as part of one large vector. In
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* gtsam this vector is always pre-allocated for efficiency, using the
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* advanced interface described below. Accessing and modifying already-allocated
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* values is \f$ O(1) \f$. Using the insert() function of the standard interface
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* is slow because it requires re-allocating the internal vector.
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*
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* For advanced usage, or where speed is important:
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* - Allocate space ahead of time using a pre-allocating constructor
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* (\ref AdvancedConstructors "Advanced Constructors"), Zero(),
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* SameStructure(), resize(), or append(). Do not use
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* insert(Index, const Vector&), which always has to re-allocate the
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* internal vector.
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* - The vector() function permits access to the underlying Vector, for
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* doing mathematical or other operations that require all values.
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* - operator[]() returns a SubVector view of the underlying Vector,
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* without copying any data.
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*
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* Access is through the variable index j, and returns a SubVector,
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* which is a view on the underlying data structure.
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@ -84,16 +98,16 @@ namespace gtsam {
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typedef ValueMaps::const_reverse_iterator const_reverse_iterator; ///< Const reverse iterator over vector values
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typedef boost::shared_ptr<VectorValues> shared_ptr; ///< shared_ptr to this class
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/// @name Standard constructors
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/// @name Standard Constructors
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/// @{
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/**
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* Default constructor creates an empty VectorValues.
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*/
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VectorValues() {} //
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VectorValues() {}
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/** Copy constructor */
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VectorValues(const VectorValues &other); //
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VectorValues(const VectorValues &other);
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/** Named constructor to create a VectorValues of the same structure of the
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* specifed one, but filled with zeros.
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@ -102,27 +116,33 @@ namespace gtsam {
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static VectorValues Zero(const VectorValues& model);
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/// @}
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/// @name Standard interface
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/// @name Standard Interface
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/// @{
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/** Number of variables stored, always 1 more than the highest variable index,
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* even if some variables with lower indices are not present. */
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Index size() const { return maps_.size(); } //
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Index size() const { return maps_.size(); }
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/** Return the dimension of variable \c j. */
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size_t dim(Index j) const { checkExists(j); return (*this)[j].rows(); } //
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size_t dim(Index j) const { checkExists(j); return (*this)[j].rows(); }
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/** Return the summed dimensionality of all variables. */
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size_t dim() const { return values_.rows(); } //
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size_t dim() const { return values_.rows(); }
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/** Check whether a variable exists by index. */
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bool exists(Index j) const { return j < size() && maps_[j].rows() > 0; } //
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/** Check whether a variable with index \c j exists. */
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bool exists(Index j) const { return j < size() && maps_[j].rows() > 0; }
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/** Reference a variable by index. */
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SubVector& operator[](Index j) { checkExists(j); return maps_[j]; } //
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/** Read/write access to the vector value with index \c j, throws std::out_of_range if \c j does not exist, identical to operator[](Index). */
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SubVector& at(Index j) { checkExists(j); return maps_[j]; }
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/** Reference a variable by index. */
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const SubVector& operator[](Index j) const { checkExists(j); return maps_[j]; } //
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/** Access the vector value with index \c j (const version), throws std::out_of_range if \c j does not exist, identical to operator[](Index). */
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const SubVector& at(Index j) const { checkExists(j); return maps_[j]; }
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/** Read/write access to the vector value with index \c j, throws std::out_of_range if \c j does not exist, identical to at(Index). */
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SubVector& operator[](Index j) { return at(j); }
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/** Access the vector value with index \c j (const version), throws std::out_of_range if \c j does not exist, identical to at(Index). */
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const SubVector& operator[](Index j) const { return at(j); }
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/** Insert a vector \c value with index \c j.
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* Causes reallocation. Can be used to insert values in any order, but
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@ -130,68 +150,79 @@ namespace gtsam {
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* @param value The vector to be inserted.
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* @param j The index with which the value will be associated.
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*/
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void insert(Index j, const Vector& value); //
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void insert(Index j, const Vector& value);
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/** Assignment */
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VectorValues& operator=(const VectorValues& rhs); //
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VectorValues& operator=(const VectorValues& rhs);
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iterator begin() { chk(); return maps_.begin(); } ///< Iterator over variables
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const_iterator begin() const { chk(); return maps_.begin(); } ///< Iterator over variables
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iterator end() { chk(); return maps_.end(); } ///< Iterator over variables
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const_iterator end() const { chk(); return maps_.end(); } ///< Iterator over variables
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reverse_iterator rbegin() { chk(); return maps_.rbegin(); } ///< Iterator over variables
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const_reverse_iterator rbegin() const { chk(); return maps_.rbegin(); } ///< Iterator over variables
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reverse_iterator rend() { chk(); return maps_.rend(); } ///< Iterator over variables
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const_reverse_iterator rend() const { chk(); return maps_.rend(); } ///< Iterator over variables
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reverse_iterator rbegin() { chk(); return maps_.rbegin(); } ///< Reverse iterator over variables
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const_reverse_iterator rbegin() const { chk(); return maps_.rbegin(); } ///< Reverse iterator over variables
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reverse_iterator rend() { chk(); return maps_.rend(); } ///< Reverse iterator over variables
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const_reverse_iterator rend() const { chk(); return maps_.rend(); } ///< Reverse iterator over variables
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/** print required by Testable for unit testing */
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void print(const std::string& str = "VectorValues: ") const; //
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void print(const std::string& str = "VectorValues: ") const;
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/** equals required by Testable for unit testing */
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bool equals(const VectorValues& x, double tol = 1e-9) const; //
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bool equals(const VectorValues& x, double tol = 1e-9) const;
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/// @}
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/// @name Advanced constructors
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/// \anchor AdvancedConstructors
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/// @name Advanced Constructors
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/// @{
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/** Construct from a container of variable dimensions (in variable order). */
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template<class CONTAINER>
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VectorValues(const CONTAINER& dimensions) { append(dimensions); } //
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VectorValues(const CONTAINER& dimensions) { append(dimensions); }
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/** Construct to hold nVars vectors of varDim dimension each. */
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VectorValues(Index nVars, size_t varDim) { resize(nVars, varDim); } //
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VectorValues(Index nVars, size_t varDim) { resize(nVars, varDim); }
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/** Named constructor to create a VectorValues that matches the structure of
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* the specified VectorValues, but do not initialize the new values. */
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static VectorValues SameStructure(const VectorValues& other); //
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static VectorValues SameStructure(const VectorValues& other);
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/** Named constructor to create a VectorValues from a container of variable
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* dimensions that is filled with zeros. */
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* dimensions that is filled with zeros.
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* @param dimensions A container of the dimension of each variable to create.
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*/
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template<class CONTAINER>
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static VectorValues Zero(const CONTAINER& dimensions);
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/** Named constructor to create a VectorValues filled with zeros that has
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* \c nVars variables, each of dimension \c varDim
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* @param nVars The number of variables to create
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* @param varDim The dimension of each variable
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* @return The new VectorValues
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*/
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static VectorValues Zero(Index nVars, size_t varDim);
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/// @}
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/// @name Advanced interface
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/// @name Advanced Interface
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/// @{
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/** Resize this VectorValues to have identical structure to other, leaving
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* this VectorValues with uninitialized values.
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* @param other The VectorValues whose structure to copy
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*/
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void resizeLike(const VectorValues& other); //
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void resizeLike(const VectorValues& other);
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/** Resize the VectorValues to hold \c nVars variables, each of dimension
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* \c varDim. This function does not preserve any data, after calling
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* it all variables will be uninitialized.
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* \c varDim, not preserving any data. After calling this function, all
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* variables will be uninitialized.
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* @param nVars The number of variables to create
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* @param varDim The dimension of each variable
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*/
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void resize(Index nVars, size_t varDim);
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/** Resize the VectorValues to contain variables of the dimensions stored
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* in \c dimensions. The new variables are uninitialized, but this function
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* is used to pre-allocate space for performance. This function does not
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* preserve any data, after calling it all variables will be uninitialized.
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* in \c dimensions, not preserving any data. The new variables are
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* uninitialized, but this function is used to pre-allocate space for
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* performance. After calling this function all variables will be uninitialized.
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* @param dimensions A container of the dimension of each variable to create.
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*/
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template<class CONTAINER>
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@ -205,13 +236,13 @@ namespace gtsam {
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* @param dimensions A container of the dimension of each variable to create.
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*/
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template<class CONTAINER>
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void append(const CONTAINER& dimensions); //
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void append(const CONTAINER& dimensions);
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/** Reference the entire solution vector (const version). */
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const Vector& vector() const { chk(); return values_; } //
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const Vector& vector() const { chk(); return values_; }
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/** Reference the entire solution vector. */
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Vector& vector() { chk(); return values_; } //
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Vector& vector() { chk(); return values_; }
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/** Check whether this VectorValues has the same structure, meaning has the
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* same number of variables and that all variables are of the same dimension,
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@ -135,14 +135,17 @@ TEST(VectorValues, copyConstructor) {
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/* ************************************************************************* */
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TEST(VectorValues, assignment) {
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// insert, with out-of-order indices
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VectorValues original;
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original.insert(0, Vector_(1, 1.0));
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original.insert(1, Vector_(2, 2.0, 3.0));
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original.insert(5, Vector_(2, 6.0, 7.0));
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original.insert(2, Vector_(2, 4.0, 5.0));
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VectorValues actual;
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VectorValues actual = original;
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{
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// insert, with out-of-order indices
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VectorValues original;
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original.insert(0, Vector_(1, 1.0));
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original.insert(1, Vector_(2, 2.0, 3.0));
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original.insert(5, Vector_(2, 6.0, 7.0));
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original.insert(2, Vector_(2, 4.0, 5.0));
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actual = original;
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}
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// Check dimensions
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LONGS_EQUAL(6, actual.size());
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@ -204,6 +207,83 @@ TEST(VectorValues, SameStructure) {
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CHECK_EXCEPTION(actual.insert(1, Vector()), invalid_argument);
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}
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/* ************************************************************************* */
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TEST(VectorValues, Zero_fromModel) {
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// insert, with out-of-order indices
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VectorValues original;
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original.insert(0, Vector_(1, 1.0));
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original.insert(1, Vector_(2, 2.0, 3.0));
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original.insert(5, Vector_(2, 6.0, 7.0));
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original.insert(2, Vector_(2, 4.0, 5.0));
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VectorValues actual(VectorValues::Zero(original));
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// Check dimensions
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LONGS_EQUAL(6, actual.size());
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LONGS_EQUAL(7, actual.dim());
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LONGS_EQUAL(1, actual.dim(0));
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LONGS_EQUAL(2, actual.dim(1));
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LONGS_EQUAL(2, actual.dim(2));
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LONGS_EQUAL(2, actual.dim(5));
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// Values
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EXPECT(assert_equal(Vector::Zero(1), actual[0]));
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EXPECT(assert_equal(Vector::Zero(2), actual[1]));
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EXPECT(assert_equal(Vector::Zero(2), actual[5]));
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EXPECT(assert_equal(Vector::Zero(2), actual[2]));
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// Logic
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EXPECT(actual.exists(0));
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EXPECT(actual.exists(1));
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EXPECT(actual.exists(2));
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EXPECT(!actual.exists(3));
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EXPECT(!actual.exists(4));
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EXPECT(actual.exists(5));
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EXPECT(!actual.exists(6));
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// Check exceptions
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CHECK_EXCEPTION(actual.insert(1, Vector()), invalid_argument);
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}
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/* ************************************************************************* */
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TEST(VectorValues, Zero_fromDims) {
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vector<size_t> dims;
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dims.push_back(1);
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dims.push_back(2);
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dims.push_back(2);
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VectorValues actual(VectorValues::Zero(dims));
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// Check dimensions
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LONGS_EQUAL(3, actual.size());
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LONGS_EQUAL(5, actual.dim());
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LONGS_EQUAL(1, actual.dim(0));
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LONGS_EQUAL(2, actual.dim(1));
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LONGS_EQUAL(2, actual.dim(2));
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// Values
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EXPECT(assert_equal(Vector::Zero(1), actual[0]));
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EXPECT(assert_equal(Vector::Zero(2), actual[1]));
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EXPECT(assert_equal(Vector::Zero(2), actual[2]));
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}
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/* ************************************************************************* */
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TEST(VectorValues, Zero_fromUniform) {
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VectorValues actual(VectorValues::Zero(3, 2));
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// Check dimensions
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LONGS_EQUAL(3, actual.size());
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LONGS_EQUAL(6, actual.dim());
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LONGS_EQUAL(2, actual.dim(0));
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LONGS_EQUAL(2, actual.dim(1));
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LONGS_EQUAL(2, actual.dim(2));
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// Values
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EXPECT(assert_equal(Vector::Zero(2), actual[0]));
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EXPECT(assert_equal(Vector::Zero(2), actual[1]));
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EXPECT(assert_equal(Vector::Zero(2), actual[2]));
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}
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/* ************************************************************************* */
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TEST(VectorValues, resizeLike) {
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// insert, with out-of-order indices
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CHECK_EXCEPTION(actual.insert(1, Vector()), invalid_argument);
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}
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/* ************************************************************************* */
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TEST(VectorValues, resize_fromUniform) {
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VectorValues actual(4, 10);
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actual.resize(3, 2);
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actual[0] = Vector_(2, 1.0, 2.0);
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actual[1] = Vector_(2, 2.0, 3.0);
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actual[2] = Vector_(2, 4.0, 5.0);
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// Check dimensions
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LONGS_EQUAL(3, actual.size());
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LONGS_EQUAL(6, actual.dim());
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LONGS_EQUAL(2, actual.dim(0));
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LONGS_EQUAL(2, actual.dim(1));
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LONGS_EQUAL(2, actual.dim(2));
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// Check values
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EXPECT(assert_equal(Vector_(2, 1.0, 2.0), actual[0]));
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EXPECT(assert_equal(Vector_(2, 2.0, 3.0), actual[1]));
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EXPECT(assert_equal(Vector_(2, 4.0, 5.0), actual[2]));
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EXPECT(assert_equal(Vector_(6, 1.0, 2.0, 2.0, 3.0, 4.0, 5.0), actual.vector()));
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}
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/* ************************************************************************* */
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TEST(VectorValues, resize_fromDims) {
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vector<size_t> dims;
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dims.push_back(1);
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dims.push_back(2);
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dims.push_back(2);
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VectorValues actual(4, 10);
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actual.resize(dims);
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actual[0] = Vector_(1, 1.0);
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actual[1] = Vector_(2, 2.0, 3.0);
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actual[2] = Vector_(2, 4.0, 5.0);
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// Check dimensions
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LONGS_EQUAL(3, actual.size());
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LONGS_EQUAL(5, actual.dim());
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LONGS_EQUAL(1, actual.dim(0));
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LONGS_EQUAL(2, actual.dim(1));
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LONGS_EQUAL(2, actual.dim(2));
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// Check values
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EXPECT(assert_equal(Vector_(1, 1.0), actual[0]));
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EXPECT(assert_equal(Vector_(2, 2.0, 3.0), actual[1]));
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||||
EXPECT(assert_equal(Vector_(2, 4.0, 5.0), actual[2]));
|
||||
EXPECT(assert_equal(Vector_(5, 1.0, 2.0, 3.0, 4.0, 5.0), actual.vector()));
|
||||
}
|
||||
|
||||
/* ************************************************************************* */
|
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TEST(VectorValues, append) {
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||||
// insert
|
||||
|
|
@ -277,6 +407,20 @@ TEST(VectorValues, append) {
|
|||
CHECK_EXCEPTION(actual.insert(3, Vector()), invalid_argument);
|
||||
}
|
||||
|
||||
/* ************************************************************************* */
|
||||
TEST(VectorValues, hasSameStructure) {
|
||||
VectorValues v1(2, 3);
|
||||
VectorValues v2(3, 2);
|
||||
VectorValues v3(4, 2);
|
||||
VectorValues v4(4, 2);
|
||||
|
||||
EXPECT(!v1.hasSameStructure(v2));
|
||||
EXPECT(!v2.hasSameStructure(v3));
|
||||
EXPECT(v3.hasSameStructure(v4));
|
||||
EXPECT(VectorValues().hasSameStructure(VectorValues()));
|
||||
EXPECT(!v1.hasSameStructure(VectorValues()));
|
||||
}
|
||||
|
||||
/* ************************************************************************* */
|
||||
TEST(VectorValues, permuted_combined) {
|
||||
Vector v1 = Vector_(3, 1.0,2.0,3.0);
|
||||
|
|
@ -323,56 +467,8 @@ TEST(VectorValues, permuted_combined) {
|
|||
CHECK(assert_equal(v1, permuted2[1]))
|
||||
CHECK(assert_equal(v2, permuted2[2]))
|
||||
CHECK(assert_equal(v3, permuted2[0]))
|
||||
|
||||
}
|
||||
|
||||
///* ************************************************************************* */
|
||||
//TEST(VectorValues, range ) {
|
||||
// VectorValues v(7,2);
|
||||
// v.makeZero();
|
||||
// v[1] = Vector_(2, 1.0, 2.0);
|
||||
// v[2] = Vector_(2, 3.0, 4.0);
|
||||
// v[3] = Vector_(2, 5.0, 6.0);
|
||||
//
|
||||
// vector<size_t> idx1, idx2;
|
||||
// idx1 += 0, 1, 2, 3, 4, 5, 6; // ordered
|
||||
// idx2 += 1, 0, 2; // unordered
|
||||
//
|
||||
// // test access
|
||||
//
|
||||
// Vector actRange1 = v.range(idx1.begin(), idx1.begin() + 2);
|
||||
// EXPECT(assert_equal(Vector_(4, 0.0, 0.0, 1.0, 2.0), actRange1));
|
||||
//
|
||||
// Vector actRange2 = v.range(idx1.begin()+1, idx1.begin()+2);
|
||||
// EXPECT(assert_equal(Vector_(2, 1.0, 2.0), actRange2));
|
||||
//
|
||||
// Vector actRange3 = v.range(idx2.begin(), idx2.end());
|
||||
// EXPECT(assert_equal(Vector_(6, 1.0, 2.0, 0.0, 0.0, 3.0, 4.0), actRange3));
|
||||
//
|
||||
// // test setting values
|
||||
// VectorValues act1 = v, act2 = v, act3 = v;
|
||||
//
|
||||
// Vector a = Vector_(2, 0.1, 0.2);
|
||||
// VectorValues exp1 = act1; exp1[0] = a;
|
||||
// act1.range(idx1.begin(), idx1.begin()+1, a);
|
||||
// EXPECT(assert_equal(exp1, act1));
|
||||
//
|
||||
// Vector bc = Vector_(4, 0.1, 0.2, 0.3, 0.4);
|
||||
// VectorValues exp2 = act2;
|
||||
// exp2[2] = Vector_(2, 0.1, 0.2);
|
||||
// exp2[3] = Vector_(2, 0.3, 0.4);
|
||||
// act2.range(idx1.begin()+2, idx1.begin()+4, bc);
|
||||
// EXPECT(assert_equal(exp2, act2));
|
||||
//
|
||||
// Vector def = Vector_(6, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6);
|
||||
// VectorValues exp3 = act3;
|
||||
// exp3[1] = Vector_(2, 0.1, 0.2);
|
||||
// exp3[0] = Vector_(2, 0.3, 0.4);
|
||||
// exp3[2] = Vector_(2, 0.5, 0.6);
|
||||
// act3.range(idx2.begin(), idx2.end(), def);
|
||||
// EXPECT(assert_equal(exp3, act3));
|
||||
//}
|
||||
|
||||
/* ************************************************************************* */
|
||||
int main() {
|
||||
TestResult tr; return TestRegistry::runAllTests(tr);
|
||||
|
|
|
|||
|
|
@ -70,7 +70,7 @@ TEST_UNSAFE( ISAM, iSAM_smoother )
|
|||
EXPECT(assert_equal(expected, actual));
|
||||
|
||||
// obtain solution
|
||||
VectorValues e(VectorValues::Zero(vector<size_t>(7,2))); // expected solution
|
||||
VectorValues e(VectorValues::Zero(7,2)); // expected solution
|
||||
VectorValues optimized = optimize(actual); // actual solution
|
||||
EXPECT(assert_equal(e, optimized));
|
||||
}
|
||||
|
|
@ -181,7 +181,7 @@ TEST_UNSAFE( BayesTree, balanced_smoother_marginals )
|
|||
// Create the Bayes tree
|
||||
BayesTree<GaussianConditional> chordalBayesNet = *GaussianMultifrontalSolver(smoother).eliminate();
|
||||
|
||||
VectorValues expectedSolution(VectorValues::Zero(vector<size_t>(7,2)));
|
||||
VectorValues expectedSolution(VectorValues::Zero(7,2));
|
||||
VectorValues actualSolution = optimize(chordalBayesNet);
|
||||
EXPECT(assert_equal(expectedSolution,actualSolution,tol));
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue