Merge remote-tracking branch 'origin/develop' into feature/Feature/FixedValues

release/4.3a0
dellaert 2015-02-16 23:30:11 +01:00
commit ae1e454ffd
22 changed files with 1065 additions and 68 deletions

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@ -424,6 +424,7 @@ message(STATUS " CPack Generator : ${CPACK_GENERATOR}")
message(STATUS "GTSAM flags ")
print_config_flag(${GTSAM_USE_QUATERNIONS} "Quaternions as default Rot3 ")
print_config_flag(${GTSAM_ENABLE_CONSISTENCY_CHECKS} "Runtime consistency checking ")
print_config_flag(${GTSAM_ROT3_EXPMAP} "Rot3 retract is full ExpMap ")
print_config_flag(${GTSAM_POSE3_EXPMAP} "Pose3 retract is full ExpMap ")
message(STATUS "MATLAB toolbox flags ")

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@ -19,7 +19,6 @@ install(FILES
GtsamMatlabWrap.cmake
GtsamPythonWrap.cmake
GtsamTesting.cmake
GtsamTestingObsolete.cmake
README.html
DESTINATION "${SCRIPT_INSTALL_DIR}/GTSAMCMakeTools")

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@ -109,9 +109,8 @@ add_custom_target(examples)
# Add timing target
add_custom_target(timing)
# Include obsolete macros - will be removed in the near future
include(GtsamTestingObsolete)
# Add target to build tests without running
add_custom_target(all.tests)
# Implementations of this file's macros:
@ -165,6 +164,7 @@ macro(gtsamAddTestsGlob_impl groupName globPatterns excludedFiles linkLibraries)
add_test(NAME ${script_name} COMMAND ${script_name})
add_dependencies(check.${groupName} ${script_name})
add_dependencies(check ${script_name})
add_dependencies(all.tests ${script_name})
if(NOT MSVC AND NOT XCODE_VERSION)
add_custom_target(${script_name}.run ${EXECUTABLE_OUTPUT_PATH}${script_name})
endif()
@ -195,6 +195,7 @@ macro(gtsamAddTestsGlob_impl groupName globPatterns excludedFiles linkLibraries)
add_test(NAME ${target_name} COMMAND ${target_name})
add_dependencies(check.${groupName} ${target_name})
add_dependencies(check ${target_name})
add_dependencies(all.tests ${script_name})
# Add TOPSRCDIR
set_property(SOURCE ${script_srcs} APPEND PROPERTY COMPILE_DEFINITIONS "TOPSRCDIR=\"${PROJECT_SOURCE_DIR}\"")

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@ -0,0 +1,226 @@
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@ -3,6 +3,7 @@ include_directories(.)
# Find sources.
file(GLOB metis_sources *.c)
# Build libmetis.
add_definitions(-fPIC)
add_library(metis ${METIS_LIBRARY_TYPE} ${GKlib_sources} ${metis_sources})
if(UNIX)
target_link_libraries(metis m)

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@ -0,0 +1,103 @@
/* ----------------------------------------------------------------------------
* Atlanta, Georgia 30332-0415
* All Rights Reserved
* GTSAM Copyright 2010, Georgia Tech Research Corporation,
* Authors: Frank Dellaert, et al. (see THANKS for the full author list)
* See LICENSE for the license information
* -------------------------------------------------------------------------- */
/*
* @file OrientedPlane3.cpp
* @date Dec 19, 2013
* @author Alex Trevor
* @brief A plane, represented by a normal direction and perpendicular distance
*/
#include <gtsam/geometry/OrientedPlane3.h>
#include <gtsam/geometry/Point2.h>
#include <iostream>
using namespace std;
namespace gtsam {
/* ************************************************************************* */
/// The print fuction
void OrientedPlane3::print(const std::string& s) const {
Vector coeffs = planeCoefficients();
cout << s << " : " << coeffs << endl;
}
/* ************************************************************************* */
OrientedPlane3 OrientedPlane3::Transform(const gtsam::OrientedPlane3& plane,
const gtsam::Pose3& xr, OptionalJacobian<3, 6> Hr,
OptionalJacobian<3, 3> Hp) {
Matrix n_hr;
Matrix n_hp;
Unit3 n_rotated = xr.rotation().unrotate(plane.n_, n_hr, n_hp);
Vector n_unit = plane.n_.unitVector();
Vector unit_vec = n_rotated.unitVector();
double pred_d = n_unit.dot(xr.translation().vector()) + plane.d_;
OrientedPlane3 transformed_plane(unit_vec(0), unit_vec(1), unit_vec(2),
pred_d);
if (Hr) {
*Hr = gtsam::zeros(3, 6);
(*Hr).block<2, 3>(0, 0) = n_hr;
(*Hr).block<1, 3>(2, 3) = unit_vec;
}
if (Hp) {
Vector xrp = xr.translation().vector();
Matrix n_basis = plane.n_.basis();
Vector hpp = n_basis.transpose() * xrp;
*Hp = gtsam::zeros(3, 3);
(*Hp).block<2, 2>(0, 0) = n_hp;
(*Hp).block<1, 2>(2, 0) = hpp;
(*Hp)(2, 2) = 1;
}
return (transformed_plane);
}
/* ************************************************************************* */
Vector3 OrientedPlane3::error(const gtsam::OrientedPlane3& plane) const {
Vector2 n_error = -n_.localCoordinates(plane.n_);
double d_error = d_ - plane.d_;
Vector3 e;
e << n_error(0), n_error(1), d_error;
return (e);
}
/* ************************************************************************* */
OrientedPlane3 OrientedPlane3::retract(const Vector& v) const {
// Retract the Unit3
Vector2 n_v(v(0), v(1));
Unit3 n_retracted = n_.retract(n_v);
double d_retracted = d_ + v(2);
return OrientedPlane3(n_retracted, d_retracted);
}
/* ************************************************************************* */
Vector3 OrientedPlane3::localCoordinates(const OrientedPlane3& y) const {
Vector n_local = n_.localCoordinates(y.n_);
double d_local = d_ - y.d_;
Vector3 e;
e << n_local(0), n_local(1), -d_local;
return e;
}
/* ************************************************************************* */
Vector3 OrientedPlane3::planeCoefficients() const {
Vector unit_vec = n_.unitVector();
Vector3 a;
a << unit_vec[0], unit_vec[1], unit_vec[2], d_;
return a;
}
/* ************************************************************************* */
}

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@ -0,0 +1,116 @@
/* ----------------------------------------------------------------------------
* Atlanta, Georgia 30332-0415
* All Rights Reserved
* GTSAM Copyright 2010, Georgia Tech Research Corporation,
* Authors: Frank Dellaert, et al. (see THANKS for the full author list)
* See LICENSE for the license information
* -------------------------------------------------------------------------- */
/*
* @file OrientedPlane3.h
* @date Dec 19, 2013
* @author Alex Trevor
* @author Frank Dellaert
* @brief An infinite plane, represented by a normal direction and perpendicular distance
*/
#pragma once
#include <gtsam/geometry/Rot3.h>
#include <gtsam/geometry/Unit3.h>
#include <gtsam/geometry/Pose3.h>
#include <gtsam/base/DerivedValue.h>
namespace gtsam {
/// Represents an infinite plane in 3D.
class OrientedPlane3: public DerivedValue<OrientedPlane3> {
private:
Unit3 n_; /// The direction of the planar normal
double d_; /// The perpendicular distance to this plane
public:
enum {
dimension = 3
};
/// @name Constructors
/// @{
/// Default constructor
OrientedPlane3() :
n_(), d_(0.0) {
}
/// Construct from a Unit3 and a distance
OrientedPlane3(const Unit3& s, double d) :
n_(s), d_(d) {
}
OrientedPlane3(Vector vec) :
n_(vec(0), vec(1), vec(2)), d_(vec(3)) {
}
/// Construct from a, b, c, d
OrientedPlane3(double a, double b, double c, double d) {
Point3 p(a, b, c);
n_ = Unit3(p);
d_ = d;
}
/// The print fuction
void print(const std::string& s = std::string()) const;
/// The equals function with tolerance
bool equals(const OrientedPlane3& s, double tol = 1e-9) const {
return (n_.equals(s.n_, tol) && (fabs(d_ - s.d_) < tol));
}
/// Transforms a plane to the specified pose
static OrientedPlane3 Transform(const gtsam::OrientedPlane3& plane,
const gtsam::Pose3& xr, OptionalJacobian<3, 6> Hr = boost::none,
OptionalJacobian<3, 3> Hp = boost::none);
/// Computes the error between two poses
Vector3 error(const gtsam::OrientedPlane3& plane) const;
/// Dimensionality of tangent space = 3 DOF
inline static size_t Dim() {
return 3;
}
/// Dimensionality of tangent space = 3 DOF
inline size_t dim() const {
return 3;
}
/// The retract function
OrientedPlane3 retract(const Vector& v) const;
/// The local coordinates function
Vector3 localCoordinates(const OrientedPlane3& s) const;
/// Returns the plane coefficients (a, b, c, d)
Vector3 planeCoefficients() const;
inline Unit3 normal() const {
return n_;
}
/// @}
};
template<> struct traits<OrientedPlane3> : public internal::Manifold<
OrientedPlane3> {
};
template<> struct traits<const OrientedPlane3> : public internal::Manifold<
OrientedPlane3> {
};
} // namespace gtsam

View File

@ -96,14 +96,15 @@ struct traits<QUATERNION_TYPE> {
Vector3 omega;
const double qw = q.w();
// See Quaternion-Logmap.nb in doc for Taylor expansions
if (qw > NearlyOne) {
// Taylor expansion of (angle / s) at 1
//return (2 + 2 * (1-qw) / 3) * q.vec();
omega = (8. / 3. - 2. / 3. * qw) * q.vec();
// (2 + 2 * (1-qw) / 3) * q.vec();
omega = ( 8. / 3. - 2. / 3. * qw) * q.vec();
} else if (qw < NearlyNegativeOne) {
// Taylor expansion of (angle / s) at -1
//return (-2 - 2 * (1 + qw) / 3) * q.vec();
omega = (-8. / 3 + 2. / 3 * qw) * q.vec();
// (-2 - 2 * (1 + qw) / 3) * q.vec();
omega = (-8. / 3. - 2. / 3. * qw) * q.vec();
} else {
// Normal, away from zero case
double angle = 2 * acos(qw), s = sqrt(1 - qw * qw);

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@ -31,6 +31,10 @@
# pragma clang diagnostic pop
#endif
#ifdef GTSAM_USE_TBB
#include <tbb/mutex.h>
#endif
#include <boost/random/variate_generator.hpp>
#include <iostream>
@ -65,8 +69,15 @@ Unit3 Unit3::Random(boost::mt19937 & rng) {
return result;
}
#ifdef GTSAM_USE_TBB
tbb::mutex unit3BasisMutex;
#endif
/* ************************************************************************* */
const Matrix32& Unit3::basis() const {
#ifdef GTSAM_USE_TBB
tbb::mutex::scoped_lock lock(unit3BasisMutex);
#endif
// Return cached version if exists
if (B_)
@ -108,7 +119,7 @@ Matrix3 Unit3::skew() const {
}
/* ************************************************************************* */
Vector2 Unit3::error(const Unit3& q, OptionalJacobian<2,2> H) const {
Vector Unit3::error(const Unit3& q, OptionalJacobian<2,2> H) const {
// 2D error is equal to B'*q, as B is 3x2 matrix and q is 3x1
Matrix23 Bt = basis().transpose();
Vector2 xi = Bt * q.p_.vector();

View File

@ -38,7 +38,9 @@ private:
public:
enum { dimension = 2 };
enum {
dimension = 2
};
/// @name Constructors
/// @{
@ -65,8 +67,8 @@ public:
}
/// Named constructor from Point3 with optional Jacobian
static Unit3 FromPoint3(const Point3& point, OptionalJacobian<2,3> H =
boost::none);
static Unit3 FromPoint3(const Point3& point, //
OptionalJacobian<2, 3> H = boost::none);
/// Random direction, using boost::uniform_on_sphere
static Unit3 Random(boost::mt19937 & rng);
@ -99,24 +101,29 @@ public:
Matrix3 skew() const;
/// Return unit-norm Point3
const Point3& point3(OptionalJacobian<3,2> H = boost::none) const {
const Point3& point3(OptionalJacobian<3, 2> H = boost::none) const {
if (H)
*H = basis();
return p_;
}
/// Return unit-norm Vector
Vector unitVector(boost::optional<Matrix&> H = boost::none) const {
if (H)
*H = basis();
return (p_.vector());
}
/// Return scaled direction as Point3
friend Point3 operator*(double s, const Unit3& d) {
return s * d.p_;
}
/// Signed, vector-valued error between two directions
Vector2 error(const Unit3& q,
OptionalJacobian<2,2> H = boost::none) const;
Vector error(const Unit3& q, OptionalJacobian<2, 2> H = boost::none) const;
/// Distance between two directions
double distance(const Unit3& q,
OptionalJacobian<1,2> H = boost::none) const;
double distance(const Unit3& q, OptionalJacobian<1, 2> H = boost::none) const;
/// @}
@ -153,25 +160,27 @@ private:
/** Serialization function */
friend class boost::serialization::access;
template<class ARCHIVE>
void serialize(ARCHIVE & ar, const unsigned int version) {
ar & BOOST_SERIALIZATION_NVP(p_);
// homebrew serialize Eigen Matrix
ar & boost::serialization::make_nvp("B11", (*B_)(0,0));
ar & boost::serialization::make_nvp("B12", (*B_)(0,1));
ar & boost::serialization::make_nvp("B21", (*B_)(1,0));
ar & boost::serialization::make_nvp("B22", (*B_)(1,1));
ar & boost::serialization::make_nvp("B31", (*B_)(2,0));
ar & boost::serialization::make_nvp("B32", (*B_)(2,1));
}
void serialize(ARCHIVE & ar, const unsigned int version) {
ar & BOOST_SERIALIZATION_NVP(p_);
// homebrew serialize Eigen Matrix
ar & boost::serialization::make_nvp("B11", (*B_)(0, 0));
ar & boost::serialization::make_nvp("B12", (*B_)(0, 1));
ar & boost::serialization::make_nvp("B21", (*B_)(1, 0));
ar & boost::serialization::make_nvp("B22", (*B_)(1, 1));
ar & boost::serialization::make_nvp("B31", (*B_)(2, 0));
ar & boost::serialization::make_nvp("B32", (*B_)(2, 1));
}
/// @}
};
// Define GTSAM traits
template <> struct traits<Unit3> : public internal::Manifold<Unit3> {};
template<> struct traits<Unit3> : public internal::Manifold<Unit3> {
};
template <> struct traits<const Unit3> : public internal::Manifold<Unit3> {};
template<> struct traits<const Unit3> : public internal::Manifold<Unit3> {
};
} // namespace gtsam

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@ -0,0 +1,125 @@
/* ----------------------------------------------------------------------------
* GTSAM Copyright 2010, Georgia Tech Research Corporation,
* Atlanta, Georgia 30332-0415
* All Rights Reserved
* Authors: Frank Dellaert, et al. (see THANKS for the full author list)
* See LICENSE for the license information
* -------------------------------------------------------------------------- */
/*
* @file testOrientedPlane3.cpp
* @date Dec 19, 2012
* @author Alex Trevor
* @brief Tests the OrientedPlane3 class
*/
#include <gtsam/geometry/Unit3.h>
#include <gtsam/geometry/OrientedPlane3.h>
#include <gtsam/nonlinear/Symbol.h>
#include <gtsam/geometry/Pose3.h>
#include <gtsam/inference/FactorGraph.h>
#include <gtsam/linear/NoiseModel.h>
#include <gtsam/nonlinear/NonlinearFactorGraph.h>
#include <gtsam/nonlinear/LevenbergMarquardtOptimizer.h>
#include <gtsam/nonlinear/Marginals.h>
#include <gtsam/nonlinear/ISAM2.h>
#include <gtsam/base/Testable.h>
#include <gtsam/base/numericalDerivative.h>
#include <CppUnitLite/TestHarness.h>
#include <boost/bind.hpp>
#include <boost/foreach.hpp>
#include <boost/assign/std/vector.hpp>
using namespace boost::assign;
using namespace gtsam;
using namespace std;
GTSAM_CONCEPT_TESTABLE_INST(OrientedPlane3)
GTSAM_CONCEPT_MANIFOLD_INST(OrientedPlane3)
//*******************************************************************************
TEST (OrientedPlane3, transform)
{
// Test transforming a plane to a pose
gtsam::Pose3 pose(gtsam::Rot3::ypr (-M_PI/4.0, 0.0, 0.0), gtsam::Point3(2.0, 3.0, 4.0));
OrientedPlane3 plane (-1 , 0, 0, 5);
OrientedPlane3 expected_meas (-sqrt (2.0)/2.0, -sqrt (2.0)/2.0, 0.0, 3);
OrientedPlane3 transformed_plane = OrientedPlane3::Transform (plane, pose, boost::none, boost::none);
EXPECT (assert_equal (expected_meas, transformed_plane, 1e-9));
// Test the jacobians of transform
Matrix actualH1, expectedH1, actualH2, expectedH2;
{
expectedH1 = numericalDerivative11<OrientedPlane3, Pose3>(boost::bind (&OrientedPlane3::Transform, plane, _1, boost::none, boost::none), pose);
OrientedPlane3 tformed = OrientedPlane3::Transform (plane, pose, actualH1, boost::none);
EXPECT (assert_equal (expectedH1, actualH1, 1e-9));
}
{
expectedH2 = numericalDerivative11<OrientedPlane3, OrientedPlane3> (boost::bind (&OrientedPlane3::Transform, _1, pose, boost::none, boost::none), plane);
OrientedPlane3 tformed = OrientedPlane3::Transform (plane, pose, boost::none, actualH2);
EXPECT (assert_equal (expectedH2, actualH2, 1e-9));
}
}
//*******************************************************************************
// Returns a random vector -- copied from testUnit3.cpp
inline static Vector randomVector(const Vector& minLimits,
const Vector& maxLimits) {
// Get the number of dimensions and create the return vector
size_t numDims = dim(minLimits);
Vector vector = zero(numDims);
// Create the random vector
for (size_t i = 0; i < numDims; i++) {
double range = maxLimits(i) - minLimits(i);
vector(i) = (((double) rand()) / RAND_MAX) * range + minLimits(i);
}
return vector;
}
//*******************************************************************************
TEST(OrientedPlane3, localCoordinates_retract) {
size_t numIterations = 10000;
gtsam::Vector minPlaneLimit(4), maxPlaneLimit(4);
minPlaneLimit << -1.0, -1.0, -1.0, 0.01;
maxPlaneLimit << 1.0, 1.0, 1.0, 10.0;
Vector minXiLimit(3),maxXiLimit(3);
minXiLimit << -M_PI, -M_PI, -10.0;
maxXiLimit << M_PI, M_PI, 10.0;
for (size_t i = 0; i < numIterations; i++) {
sleep(0);
// Create a Plane
OrientedPlane3 p1(randomVector(minPlaneLimit, maxPlaneLimit));
Vector v12 = randomVector(minXiLimit, maxXiLimit);
// Magnitude of the rotation can be at most pi
if (v12.segment<3>(0).norm () > M_PI)
v12.segment<3>(0) = v12.segment<3>(0) / M_PI;
OrientedPlane3 p2 = p1.retract(v12);
// Check if the local coordinates and retract return the same results.
Vector actual_v12 = p1.localCoordinates(p2);
EXPECT(assert_equal(v12, actual_v12, 1e-3));
OrientedPlane3 actual_p2 = p1.retract(actual_v12);
EXPECT(assert_equal(p2, actual_p2, 1e-3));
}
}
/* ************************************************************************* */
int main() {
srand(time(NULL));
TestResult tr;
return TestRegistry::runAllTests(tr);
}
/* ************************************************************************* */

View File

@ -758,7 +758,6 @@ TEST(Pose3 , Invariants) {
check_manifold_invariants(id,T3);
check_manifold_invariants(T2,id);
check_manifold_invariants(T2,T3);
}
//******************************************************************************
@ -769,7 +768,6 @@ TEST(Pose3 , LieGroupDerivatives) {
CHECK_LIE_GROUP_DERIVATIVES(id,T2);
CHECK_LIE_GROUP_DERIVATIVES(T2,id);
CHECK_LIE_GROUP_DERIVATIVES(T2,T3);
}
//******************************************************************************
@ -777,14 +775,15 @@ TEST(Pose3 , ChartDerivatives) {
Pose3 id;
if (ROT3_DEFAULT_COORDINATES_MODE == Rot3::EXPMAP) {
CHECK_CHART_DERIVATIVES(id,id);
CHECK_CHART_DERIVATIVES(id,T2);
CHECK_CHART_DERIVATIVES(T2,id);
CHECK_CHART_DERIVATIVES(T2,T3);
// CHECK_CHART_DERIVATIVES(id,T2);
// CHECK_CHART_DERIVATIVES(T2,id);
// CHECK_CHART_DERIVATIVES(T2,T3);
}
}
/* ************************************************************************* */
int main(){ //TestResult tr; return TestRegistry::runAllTests(tr);}
std::cout<<"testPose3 currently disabled!!" << std::endl;
int main() {
TestResult tr;
return TestRegistry::runAllTests(tr);
}
/* ************************************************************************* */

View File

@ -39,6 +39,14 @@ TEST(Quaternion , Constructor) {
Q q(Eigen::AngleAxisd(1, Vector3(0, 0, 1)));
}
//******************************************************************************
TEST(Quaternion , Logmap) {
Q q1(5e-06, 0, 0, 1), q2(-5e-06, 0, 0, -1);
Vector3 v1 = traits<Q>::Logmap(q1);
Vector3 v2 = traits<Q>::Logmap(q2);
EXPECT(assert_equal(v1, v2));
}
//******************************************************************************
TEST(Quaternion , Local) {
Vector3 z_axis(0, 0, 1);
@ -47,7 +55,7 @@ TEST(Quaternion , Local) {
QuaternionJacobian H1, H2;
Vector3 expected(0, 0, 0.1);
Vector3 actual = traits<Q>::Local(q1, q2, H1, H2);
EXPECT(assert_equal((Vector)expected,actual));
EXPECT(assert_equal((Vector )expected, actual));
}
//******************************************************************************
@ -69,7 +77,7 @@ TEST(Quaternion , Compose) {
Q expected = q1 * q2;
Q actual = traits<Q>::Compose(q1, q2);
EXPECT(traits<Q>::Equals(expected,actual));
EXPECT(traits<Q>::Equals(expected, actual));
}
//******************************************************************************
@ -85,7 +93,7 @@ TEST(Quaternion , Between) {
Q expected = q1.inverse() * q2;
Q actual = traits<Q>::Between(q1, q2);
EXPECT(traits<Q>::Equals(expected,actual));
EXPECT(traits<Q>::Equals(expected, actual));
}
//******************************************************************************
@ -94,36 +102,36 @@ TEST(Quaternion , Inverse) {
Q expected(Eigen::AngleAxisd(-0.1, z_axis));
Q actual = traits<Q>::Inverse(q1);
EXPECT(traits<Q>::Equals(expected,actual));
EXPECT(traits<Q>::Equals(expected, actual));
}
//******************************************************************************
TEST(Quaternion , Invariants) {
check_group_invariants(id,id);
check_group_invariants(id,R1);
check_group_invariants(R2,id);
check_group_invariants(R2,R1);
check_group_invariants(id, id);
check_group_invariants(id, R1);
check_group_invariants(R2, id);
check_group_invariants(R2, R1);
check_manifold_invariants(id,id);
check_manifold_invariants(id,R1);
check_manifold_invariants(R2,id);
check_manifold_invariants(R2,R1);
check_manifold_invariants(id, id);
check_manifold_invariants(id, R1);
check_manifold_invariants(R2, id);
check_manifold_invariants(R2, R1);
}
//******************************************************************************
TEST(Quaternion , LieGroupDerivatives) {
CHECK_LIE_GROUP_DERIVATIVES(id,id);
CHECK_LIE_GROUP_DERIVATIVES(id,R2);
CHECK_LIE_GROUP_DERIVATIVES(R2,id);
CHECK_LIE_GROUP_DERIVATIVES(R2,R1);
CHECK_LIE_GROUP_DERIVATIVES(id, id);
CHECK_LIE_GROUP_DERIVATIVES(id, R2);
CHECK_LIE_GROUP_DERIVATIVES(R2, id);
CHECK_LIE_GROUP_DERIVATIVES(R2, R1);
}
//******************************************************************************
TEST(Quaternion , ChartDerivatives) {
CHECK_CHART_DERIVATIVES(id,id);
CHECK_CHART_DERIVATIVES(id,R2);
CHECK_CHART_DERIVATIVES(R2,id);
CHECK_CHART_DERIVATIVES(R2,R1);
CHECK_CHART_DERIVATIVES(id, id);
CHECK_CHART_DERIVATIVES(id, R2);
CHECK_CHART_DERIVATIVES(R2, id);
CHECK_CHART_DERIVATIVES(R2, R1);
}
//******************************************************************************

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@ -697,9 +697,8 @@ TEST(Rot3 , ChartDerivatives) {
/* ************************************************************************* */
int main() {
// TestResult tr;
// return TestRegistry::runAllTests(tr);
std::cout << "testRot3 currently disabled!!" << std::endl;
TestResult tr;
return TestRegistry::runAllTests(tr);
}
/* ************************************************************************* */

View File

@ -15,20 +15,82 @@
* @author Alireza Fathi
*/
#include <gtsam/geometry/Point3.h>
#include <gtsam/geometry/Rot3.h>
#include <gtsam/geometry/Quaternion.h>
#include <gtsam/base/Testable.h>
#include <gtsam/base/numericalDerivative.h>
#include <gtsam/base/lieProxies.h>
#include <boost/math/constants/constants.hpp>
#include <CppUnitLite/TestHarness.h>
using namespace std;
using namespace gtsam;
#ifdef GTSAM_USE_QUATERNIONS
// No quaternion only tests
//******************************************************************************
TEST(Rot3Q , Compare) {
using boost::none;
// We set up expected values with quaternions
typedef Quaternion Q;
typedef traits<Q> TQ;
typedef TQ::ChartJacobian OJ;
// We check Rot3 expressions
typedef Rot3 R;
typedef traits<R> TR;
// Define test values
Q q1(Eigen::AngleAxisd(1, Vector3(0, 0, 1)));
Q q2(Eigen::AngleAxisd(2, Vector3(0, 1, 0)));
R R1(q1), R2(q2);
// Check Compose
Q q3 = TQ::Compose(q1, q2, none, none);
R R3 = TR::Compose(R1, R2, none, none);
EXPECT(assert_equal(R(q3), R3));
// Check Retract
Vector3 v(1e-5, 0, 0);
Q q4 = TQ::Retract(q3, v);
R R4 = TR::Retract(R3, v);
EXPECT(assert_equal(R(q4), R4));
// Check Between
Q q5 = TQ::Between(q3, q4);
R R5 = R3.between(R4);
EXPECT(assert_equal(R(q5), R5));
// Check toQuaternion
EXPECT(assert_equal(q5, R5.toQuaternion()));
// Check Logmap
Vector3 vQ = TQ::Logmap(q5);
Vector3 vR = R::Logmap(R5);
EXPECT(assert_equal(vQ, vR));
// Check Local
vQ = TQ::Local(q3, q4);
vR = TR::Local(R3, R4);
EXPECT(assert_equal(vQ, vR));
// Check Retract/Local of Compose
Vector3 vQ1 = TQ::Local(q3, TQ::Compose(q1, TQ::Retract(q2, v)));
Vector3 vR1 = TR::Local(R3, TR::Compose(R1, TR::Retract(R2, v)));
EXPECT(assert_equal(vQ1, vR1));
Vector3 vQ2 = TQ::Local(q3, TQ::Compose(q1, TQ::Retract(q2, -v)));
Vector3 vR2 = TR::Local(R3, TR::Compose(R1, TR::Retract(R2, -v)));
EXPECT(assert_equal(vQ2, vR2));
EXPECT(assert_equal<Vector3>((vQ1 - vQ2) / 0.2, (vR1 - vR2) / 0.2));
// Check Compose Derivatives
Matrix HQ, HR;
HQ = numericalDerivative42<Q, Q, Q, OJ, OJ>(TQ::Compose, q1, q2, none, none);
HR = numericalDerivative42<R, R, R, OJ, OJ>(TR::Compose, R1, R2, none, none);
EXPECT(assert_equal(HQ, HR));
}
#endif

View File

@ -886,6 +886,7 @@ namespace gtsam {
typedef noiseModel::Gaussian::shared_ptr SharedGaussian;
typedef noiseModel::Diagonal::shared_ptr SharedDiagonal;
typedef noiseModel::Constrained::shared_ptr SharedConstrained;
typedef noiseModel::Isotropic::shared_ptr SharedIsotropic;
/// traits
template<> struct traits<noiseModel::Gaussian> : public Testable<noiseModel::Gaussian> {};

View File

@ -17,7 +17,7 @@
*/
#include <gtsam/linear/linearExceptions.h>
#include <gtsam/inference/Symbol.h>
#include <boost/format.hpp>
namespace gtsam {
@ -25,16 +25,19 @@ namespace gtsam {
/* ************************************************************************* */
const char* IndeterminantLinearSystemException::what() const throw()
{
if(!description_)
if(!description_) {
description_ = String(
"\nIndeterminant linear system detected while working near variable\n"
+ boost::lexical_cast<String>(j_) + ".\n"
+ boost::lexical_cast<String>(j_) +
+ " (Symbol: " + boost::lexical_cast<String>(
gtsam::DefaultKeyFormatter(gtsam::Symbol(j_))) + ").\n"
"\n\
Thrown when a linear system is ill-posed. The most common cause for this\n\
error is having underconstrained variables. Mathematically, the system is\n\
underdetermined. See the GTSAM Doxygen documentation at\n\
http://borg.cc.gatech.edu/ on gtsam::IndeterminantLinearSystemException for\n\
more information.");
}
return description_->c_str();
}

View File

@ -83,7 +83,7 @@ public:
integrationCovariance_(integrationErrorCovariance) {}
/// methods to access class variables
const bool use2ndOrderIntegration() const {return use2ndOrderIntegration_;}
bool use2ndOrderIntegration() const {return use2ndOrderIntegration_;}
const Vector3& deltaPij() const {return deltaPij_;}
const Vector3& deltaVij() const {return deltaVij_;}
const imuBias::ConstantBias& biasHat() const { return biasHat_;}

View File

@ -0,0 +1,54 @@
/*
* OrientedPlane3Factor.cpp
*
* Created on: Jan 29, 2014
* Author: Natesh Srinivasan
*/
#include "OrientedPlane3Factor.h"
using namespace std;
namespace gtsam {
//***************************************************************************
void OrientedPlane3DirectionPrior::print(const string& s) const {
cout << "Prior Factor on " << landmarkKey_ << "\n";
measured_p_.print("Measured Plane");
this->noiseModel_->print(" noise model: ");
}
//***************************************************************************
bool OrientedPlane3DirectionPrior::equals(const NonlinearFactor& expected,
double tol) const {
const This* e = dynamic_cast<const This*>(&expected);
return e != NULL && Base::equals(*e, tol) && this->measured_p_.equals(e->measured_p_, tol);
}
//***************************************************************************
Vector OrientedPlane3DirectionPrior::evaluateError(const OrientedPlane3& plane,
boost::optional<Matrix&> H) const {
if(H) {
Matrix H_p;
Unit3 n_hat_p = measured_p_.normal();
Unit3 n_hat_q = plane.normal();
Vector e = n_hat_p.error(n_hat_q,H_p);
H->resize(2,3);
H->block <2,2>(0,0) << H_p;
H->block <2,1>(0,2) << Matrix::Zero(2, 1);
return e;
} else {
Unit3 n_hat_p = measured_p_.normal();
Unit3 n_hat_q = plane.normal();
Vector e = n_hat_p.error(n_hat_q);
return e;
}
}
}

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@ -0,0 +1,95 @@
/*
* @file OrientedPlane3Factor.cpp
* @brief OrientedPlane3 Factor class
* @author Alex Trevor
* @date December 22, 2013
*/
#pragma once
#include <gtsam/nonlinear/NonlinearFactor.h>
#include <gtsam/geometry/Pose3.h>
#include <gtsam/geometry/OrientedPlane3.h>
#include <gtsam/nonlinear/Symbol.h>
#include <gtsam/inference/Key.h>
#include <iostream>
namespace gtsam {
/**
* Factor to measure a planar landmark from a given pose
*/
class OrientedPlane3Factor: public NoiseModelFactor2<Pose3, OrientedPlane3> {
protected:
Symbol poseSymbol_;
Symbol landmarkSymbol_;
Vector measured_coeffs_;
OrientedPlane3 measured_p_;
typedef NoiseModelFactor2<Pose3, OrientedPlane3 > Base;
public:
/// Constructor
OrientedPlane3Factor ()
{}
/// Constructor with measured plane coefficients (a,b,c,d), noise model, pose symbol
OrientedPlane3Factor (const Vector&z, const SharedGaussian& noiseModel,
const Symbol& pose,
const Symbol& landmark)
: Base (noiseModel, pose, landmark),
poseSymbol_ (pose),
landmarkSymbol_ (landmark),
measured_coeffs_ (z)
{
measured_p_ = OrientedPlane3 (Unit3 (z (0), z (1), z (2)), z (3));
}
/// print
void print(const std::string& s="PlaneFactor") const;
virtual Vector evaluateError(const Pose3& pose, const OrientedPlane3& plane,
boost::optional<Matrix&> H1 = boost::none,
boost::optional<Matrix&> H2 = boost::none) const
{
OrientedPlane3 predicted_plane = OrientedPlane3::Transform (plane, pose, H1, H2);
Vector err(3);
err << predicted_plane.error (measured_p_);
return (err);
};
};
// TODO: Convert this factor to dimension two, three dimensions is redundant for direction prior
class OrientedPlane3DirectionPrior: public NoiseModelFactor1<OrientedPlane3> {
protected:
OrientedPlane3 measured_p_; /// measured plane parameters
Key landmarkKey_;
typedef NoiseModelFactor1<OrientedPlane3 > Base;
public:
typedef OrientedPlane3DirectionPrior This;
/// Constructor
OrientedPlane3DirectionPrior ()
{}
/// Constructor with measured plane coefficients (a,b,c,d), noise model, landmark symbol
OrientedPlane3DirectionPrior (Key key, const Vector&z,
const SharedGaussian& noiseModel)
: Base (noiseModel, key),
landmarkKey_ (key)
{
measured_p_ = OrientedPlane3 (Unit3 (z (0), z (1), z (2)), z (3));
}
/// print
void print(const std::string& s) const;
/** equals */
virtual bool equals(const NonlinearFactor& expected, double tol = 1e-9) const;
virtual Vector evaluateError(const OrientedPlane3& plane,
boost::optional<Matrix&> H = boost::none) const;
};
} // gtsam

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@ -0,0 +1,183 @@
/* ----------------------------------------------------------------------------
* GTSAM Copyright 2010, Georgia Tech Research Corporation,
* Atlanta, Georgia 30332-0415
* All Rights Reserved
* Authors: Frank Dellaert, et al. (see THANKS for the full author list)
* See LICENSE for the license information
* -------------------------------------------------------------------------- */
/*
* @file testOrientedPlane3.cpp
* @date Dec 19, 2012
* @author Alex Trevor
* @brief Tests the OrientedPlane3Factor class
*/
#include <gtsam/geometry/Unit3.h>
#include <gtsam/geometry/OrientedPlane3.h>
#include <gtsam/slam/OrientedPlane3Factor.h>
#include <gtsam/nonlinear/Symbol.h>
#include <gtsam/geometry/Pose3.h>
#include <gtsam/inference/FactorGraph.h>
#include <gtsam/linear/NoiseModel.h>
#include <gtsam/slam/PriorFactor.h>
#include <gtsam/slam/BetweenFactor.h>
#include <gtsam/nonlinear/NonlinearFactorGraph.h>
#include <gtsam/nonlinear/LevenbergMarquardtOptimizer.h>
#include <gtsam/nonlinear/Marginals.h>
#include <gtsam/nonlinear/ISAM2.h>
#include <gtsam/base/Testable.h>
#include <gtsam/base/numericalDerivative.h>
#include <CppUnitLite/TestHarness.h>
#include <boost/bind.hpp>
#include <boost/foreach.hpp>
#include <boost/assign/std/vector.hpp>
using namespace boost::assign;
using namespace gtsam;
using namespace std;
GTSAM_CONCEPT_TESTABLE_INST(OrientedPlane3)
GTSAM_CONCEPT_MANIFOLD_INST(OrientedPlane3)
TEST (OrientedPlane3, lm_translation_error)
{
// Tests one pose, two measurements of the landmark that differ in range only.
// Normal along -x, 3m away
gtsam::Symbol lm_sym ('p', 0);
gtsam::OrientedPlane3 test_lm0 (-1.0, 0.0, 0.0, 3.0);
gtsam::ISAM2 isam2;
gtsam::Values new_values;
gtsam::NonlinearFactorGraph new_graph;
// Init pose and prior. Pose Prior is needed since a single plane measurement does not fully constrain the pose
gtsam::Symbol init_sym ('x', 0);
gtsam::Pose3 init_pose (gtsam::Rot3::ypr (0.0, 0.0, 0.0),
gtsam::Point3 (0.0, 0.0, 0.0));
gtsam::Vector sigmas(6);
sigmas << 0.001, 0.001, 0.001, 0.001, 0.001, 0.001;
gtsam::PriorFactor<gtsam::Pose3> pose_prior (init_sym, init_pose, gtsam::noiseModel::Diagonal::Sigmas (sigmas) );
new_values.insert (init_sym, init_pose);
new_graph.add (pose_prior);
// Add two landmark measurements, differing in range
new_values.insert (lm_sym, test_lm0);
gtsam::Vector sigmas3(3);
sigmas3 << 0.1, 0.1, 0.1;
gtsam::Vector test_meas0_mean(4);
test_meas0_mean << -1.0, 0.0, 0.0, 3.0;
gtsam::OrientedPlane3Factor test_meas0 (test_meas0_mean, gtsam::noiseModel::Diagonal::Sigmas (sigmas3), init_sym, lm_sym);
new_graph.add (test_meas0);
gtsam::Vector test_meas1_mean(4);
test_meas1_mean << -1.0, 0.0, 0.0, 1.0;
gtsam::OrientedPlane3Factor test_meas1 (test_meas1_mean, gtsam::noiseModel::Diagonal::Sigmas (sigmas3), init_sym, lm_sym);
new_graph.add (test_meas1);
// Optimize
gtsam::ISAM2Result result = isam2.update (new_graph, new_values);
gtsam::Values result_values = isam2.calculateEstimate ();
gtsam::OrientedPlane3 optimized_plane_landmark = result_values.at<gtsam::OrientedPlane3>(lm_sym);
// Given two noisy measurements of equal weight, expect result between the two
gtsam::OrientedPlane3 expected_plane_landmark (-1.0, 0.0, 0.0, 2.0);
EXPECT (assert_equal (optimized_plane_landmark, expected_plane_landmark));
}
TEST (OrientedPlane3, lm_rotation_error)
{
// Tests one pose, two measurements of the landmark that differ in angle only.
// Normal along -x, 3m away
gtsam::Symbol lm_sym ('p', 0);
gtsam::OrientedPlane3 test_lm0 (-1.0, 0.0, 0.0, 3.0);
gtsam::ISAM2 isam2;
gtsam::Values new_values;
gtsam::NonlinearFactorGraph new_graph;
// Init pose and prior. Pose Prior is needed since a single plane measurement does not fully constrain the pose
gtsam::Symbol init_sym ('x', 0);
gtsam::Pose3 init_pose (gtsam::Rot3::ypr (0.0, 0.0, 0.0),
gtsam::Point3 (0.0, 0.0, 0.0));
gtsam::PriorFactor<gtsam::Pose3> pose_prior (init_sym, init_pose, gtsam::noiseModel::Diagonal::Sigmas ((Vector(6) << 0.001, 0.001, 0.001, 0.001, 0.001, 0.001).finished()));
new_values.insert (init_sym, init_pose);
new_graph.add (pose_prior);
// // Add two landmark measurements, differing in angle
new_values.insert (lm_sym, test_lm0);
Vector test_meas0_mean(4);
test_meas0_mean << -1.0, 0.0, 0.0, 3.0;
gtsam::OrientedPlane3Factor test_meas0 (test_meas0_mean, gtsam::noiseModel::Diagonal::Sigmas(Vector3( 0.1, 0.1, 0.1)), init_sym, lm_sym);
new_graph.add (test_meas0);
Vector test_meas1_mean(4);
test_meas1_mean << 0.0, -1.0, 0.0, 3.0;
gtsam::OrientedPlane3Factor test_meas1 (test_meas1_mean, gtsam::noiseModel::Diagonal::Sigmas (Vector3( 0.1, 0.1, 0.1)), init_sym, lm_sym);
new_graph.add (test_meas1);
// Optimize
gtsam::ISAM2Result result = isam2.update (new_graph, new_values);
gtsam::Values result_values = isam2.calculateEstimate ();
gtsam::OrientedPlane3 optimized_plane_landmark = result_values.at<gtsam::OrientedPlane3>(lm_sym);
// Given two noisy measurements of equal weight, expect result between the two
gtsam::OrientedPlane3 expected_plane_landmark (-sqrt (2.0)/2.0, -sqrt (2.0)/2.0, 0.0, 3.0);
EXPECT (assert_equal (optimized_plane_landmark, expected_plane_landmark));
}
// *************************************************************************
TEST( OrientedPlane3DirectionPriorFactor, Constructor ) {
// Example: pitch and roll of aircraft in an ENU Cartesian frame.
// If pitch and roll are zero for an aerospace frame,
// that means Z is pointing down, i.e., direction of Z = (0,0,-1)
Vector planeOrientation = (Vector(4) << 0.0, 0.0, -1.0, 10.0).finished(); // all vertical planes directly facing the origin
// Factor
Key key(1);
SharedGaussian model = gtsam::noiseModel::Diagonal::Sigmas (Vector3(0.1, 0.1, 10.0));
OrientedPlane3DirectionPrior factor(key, planeOrientation, model);
// Create a linearization point at the zero-error point
Vector theta1 = Vector4(0.0, 0.02, -1.2, 10.0);
Vector theta2 = Vector4(0.0, 0.1, - 0.8, 10.0);
Vector theta3 = Vector4(0.0, 0.2, -0.9, 10.0);
OrientedPlane3 T1(theta1);
OrientedPlane3 T2(theta2);
OrientedPlane3 T3(theta3);
// Calculate numerical derivatives
Matrix expectedH1 = numericalDerivative11<Vector,OrientedPlane3>(
boost::bind(&OrientedPlane3DirectionPrior::evaluateError, &factor, _1, boost::none), T1);
Matrix expectedH2 = numericalDerivative11<Vector,OrientedPlane3>(
boost::bind(&OrientedPlane3DirectionPrior::evaluateError, &factor, _1, boost::none), T2);
Matrix expectedH3 = numericalDerivative11<Vector,OrientedPlane3>(
boost::bind(&OrientedPlane3DirectionPrior::evaluateError, &factor, _1, boost::none), T3);
// Use the factor to calculate the derivative
Matrix actualH1, actualH2, actualH3;
factor.evaluateError(T1, actualH1);
factor.evaluateError(T2, actualH2);
factor.evaluateError(T3, actualH3);
// Verify we get the expected error
EXPECT(assert_equal(expectedH1, actualH1, 1e-8));
EXPECT(assert_equal(expectedH2, actualH2, 1e-8));
EXPECT(assert_equal(expectedH3, actualH3, 1e-8));
}
/* ************************************************************************* */
int main() {
srand(time(NULL));
TestResult tr;
return TestRegistry::runAllTests(tr);
}
/* ************************************************************************* */