Fixed cmake so that it really defines CYTHON_EXECUTABLE (instead of just threatening to do so). This has the side-benefit that compilation now works from within eclipse.

cmake/FindCython.cmake

@@ -4,8 +4,9 @@
 #
 # This code sets the following variables:
 #
-#  CYTHON_EXECUTABLE
 #  CYTHON_FOUND
+#  CYTHON_PATH
+#  CYTHON_EXECUTABLE
 #  CYTHON_VERSION
 #
 # See also UseCython.cmake
@@ -38,6 +39,15 @@ if ( PYTHONINTERP_FOUND )
   )
 endif ()
 
+# RESULT=0 means ok
+if ( NOT RESULT )
+  get_filename_component( _python_path ${PYTHON_EXECUTABLE} PATH )
+  find_program( CYTHON_EXECUTABLE
+      NAMES cython cython.bat cython3
+      HINTS ${_python_path}
+   )
+endif ()
+
 # RESULT=0 means ok
 if ( NOT RESULT )
   execute_process( COMMAND "${PYTHON_EXECUTABLE}" "-c"
@@ -59,6 +69,7 @@ find_package_handle_standard_args( Cython
     CYTHON_FOUND
   REQUIRED_VARS
     CYTHON_PATH
+    CYTHON_EXECUTABLE
   VERSION_VAR
     CYTHON_VERSION
     )

cmake/GtsamCythonWrap.cmake

@@ -52,7 +52,7 @@ function(pyx_to_cpp target pyx_file generated_cpp include_dirs)
   add_custom_command(
     OUTPUT ${generated_cpp}
     COMMAND
-      cython -v --cplus ${includes_for_cython} ${pyx_file} -o ${generated_cpp}
+      ${CYTHON_EXECUTABLE} -a -v --cplus ${includes_for_cython} ${pyx_file} -o ${generated_cpp}
     VERBATIM)
   add_custom_target(${target} ALL DEPENDS ${generated_cpp})
 endfunction()