refactor HybridBayesTree::optimize

gtsam/base/treeTraversal-inst.h

@@ -221,6 +221,6 @@ void PrintForest(const FOREST& forest, std::string str,
   PrintForestVisitorPre visitor(keyFormatter);
   DepthFirstForest(forest, str, visitor);
 }
-}
+}  // namespace treeTraversal
 
-}
+}  // namespace gtsam

gtsam/hybrid/HybridBayesTree.cpp

@@ -24,6 +24,7 @@
 #include <gtsam/hybrid/HybridBayesTree.h>
 #include <gtsam/inference/BayesTree-inst.h>
 #include <gtsam/inference/BayesTreeCliqueBase-inst.h>
+#include <gtsam/linear/GaussianJunctionTree.h>
 
 namespace gtsam {
 
@@ -39,95 +40,108 @@ bool HybridBayesTree::equals(const This& other, double tol) const {
 
 /* ************************************************************************* */
 HybridValues HybridBayesTree::optimize() const {
-  HybridBayesNet hbn;
   DiscreteBayesNet dbn;
+  DiscreteValues mpe;
 
-  KeyVector added_keys;
+  auto root = roots_.at(0);
-
-  // Iterate over all the nodes in the BayesTree
-  for (auto&& node : nodes()) {
-    // Check if conditional being added is already in the Bayes net.
-    if (std::find(added_keys.begin(), added_keys.end(), node.first) ==
-        added_keys.end()) {
   // Access the clique and get the underlying hybrid conditional
-      HybridBayesTreeClique::shared_ptr clique = node.second;
+  HybridConditional::shared_ptr root_conditional = root->conditional();
-      HybridConditional::shared_ptr conditional = clique->conditional();
-
-      // Record the key being added
-      added_keys.insert(added_keys.end(), conditional->frontals().begin(),
-                        conditional->frontals().end());
-
-      if (conditional->isDiscrete()) {
-        // If discrete, we use it to compute the MPE
-        dbn.push_back(conditional->asDiscreteConditional());
 
+  // The root should be discrete only, we compute the MPE
+  if (root_conditional->isDiscrete()) {
+    dbn.push_back(root_conditional->asDiscreteConditional());
+    mpe = DiscreteFactorGraph(dbn).optimize();
   } else {
-        // Else conditional is hybrid or continuous-only,
+    throw std::runtime_error(
-        // so we directly add it to the Hybrid Bayes net.
+        "HybridBayesTree root is not discrete-only. Please check elimination "
-        hbn.push_back(conditional);
+        "ordering or use continuous factor graph.");
   }
-    }
-  }
-  // Get the MPE
-  DiscreteValues mpe = DiscreteFactorGraph(dbn).optimize();
-  // Given the MPE, compute the optimal continuous values.
-  GaussianBayesNet gbn = hbn.choose(mpe);
 
-  // If TBB is enabled, the bayes net order gets reversed,
+  VectorValues values = optimize(mpe);
-  // so we pre-reverse it
+  return HybridValues(mpe, values);
-#ifdef GTSAM_USE_TBB
-  auto reversed = boost::adaptors::reverse(gbn);
-  gbn = GaussianBayesNet(reversed.begin(), reversed.end());
-#endif
-
-  return HybridValues(mpe, gbn.optimize());
 }
 
 /* ************************************************************************* */
+/**
+ * @brief Helper class for Depth First Forest traversal on the HybridBayesTree.
+ *
+ * When traversing the tree, the pre-order visitor will receive an instance of
+ * this class with the parent clique data.
+ */
+struct HybridAssignmentData {
+  const DiscreteValues assignment_;
+  GaussianBayesTree::sharedNode parentClique_;
+  // The gaussian bayes tree that will be recursively created.
+  GaussianBayesTree* gaussianbayesTree_;
+
+  /**
+   * @brief Construct a new Hybrid Assignment Data object.
+   *
+   * @param assignment The MPE assignment for the optimal Gaussian cliques.
+   * @param parentClique The clique from the parent node of the current node.
+   * @param gbt The Gaussian Bayes Tree being generated during tree traversal.
+   */
+  HybridAssignmentData(const DiscreteValues& assignment,
+                       const GaussianBayesTree::sharedNode& parentClique,
+                       GaussianBayesTree* gbt)
+      : assignment_(assignment),
+        parentClique_(parentClique),
+        gaussianbayesTree_(gbt) {}
+
+  /**
+   * @brief A function used during tree traversal that operators on each node
+   * before visiting the node's children.
+   *
+   * @param node The current node being visited.
+   * @param parentData The HybridAssignmentData from the parent node.
+   * @return HybridAssignmentData
+   */
+  static HybridAssignmentData AssignmentPreOrderVisitor(
+      const HybridBayesTree::sharedNode& node,
+      HybridAssignmentData& parentData) {
+    // Extract the gaussian conditional from the Hybrid clique
+    HybridConditional::shared_ptr hybrid_conditional = node->conditional();
+    GaussianConditional::shared_ptr conditional;
+    if (hybrid_conditional->isHybrid()) {
+      conditional = (*hybrid_conditional->asMixture())(parentData.assignment_);
+    } else if (hybrid_conditional->isContinuous()) {
+      conditional = hybrid_conditional->asGaussian();
+    } else {
+      // Discrete only conditional, so we set to empty gaussian conditional
+      conditional = boost::make_shared<GaussianConditional>();
+    }
+
+    // Create the GaussianClique for the current node
+    auto clique = boost::make_shared<GaussianBayesTree::Node>(conditional);
+    // Add the current clique to the GaussianBayesTree.
+    parentData.gaussianbayesTree_->addClique(clique, parentData.parentClique_);
+
+    // Create new HybridAssignmentData where the current node is the parent
+    // This will be passed down to the children nodes
+    HybridAssignmentData data(parentData.assignment_, clique,
+                              parentData.gaussianbayesTree_);
+    return data;
+  }
+};
+
+/* *************************************************************************
+ */
 VectorValues HybridBayesTree::optimize(const DiscreteValues& assignment) const {
-  GaussianBayesNet gbn;
+  GaussianBayesTree gbt;
-
+  HybridAssignmentData rootData(assignment, 0, &gbt);
-  KeyVector added_keys;
+  {
-
+    treeTraversal::no_op visitorPost;
-  // Iterate over all the nodes in the BayesTree
+    // Limits OpenMP threads since we're mixing TBB and OpenMP
-  for (auto&& node : nodes()) {
+    TbbOpenMPMixedScope threadLimiter;
-    // Check if conditional being added is already in the Bayes net.
+    treeTraversal::DepthFirstForestParallel(
-    if (std::find(added_keys.begin(), added_keys.end(), node.first) ==
+        *this, rootData, HybridAssignmentData::AssignmentPreOrderVisitor,
-        added_keys.end()) {
+        visitorPost);
-      // Access the clique and get the underlying hybrid conditional
-      HybridBayesTreeClique::shared_ptr clique = node.second;
-      HybridConditional::shared_ptr conditional = clique->conditional();
-
-      // Record the key being added
-      added_keys.insert(added_keys.end(), conditional->frontals().begin(),
-                        conditional->frontals().end());
-
-      // If conditional is hybrid (and not discrete-only), we get the Gaussian
-      // Conditional corresponding to the assignment and add it to the Gaussian
-      // Bayes Net.
-      if (conditional->isHybrid()) {
-        auto gm = conditional->asMixture();
-        GaussianConditional::shared_ptr gaussian_conditional =
-            (*gm)(assignment);
-
-        gbn.push_back(gaussian_conditional);
-
-      } else if (conditional->isContinuous()) {
-        // If conditional is Gaussian, we simply add it to the Bayes net.
-        gbn.push_back(conditional->asGaussian());
-      }
-    }
   }
 
-  // If TBB is enabled, the bayes net order gets reversed,
+  VectorValues result = gbt.optimize();
-  // so we pre-reverse it
-#ifdef GTSAM_USE_TBB
-  auto reversed = boost::adaptors::reverse(gbn);
-  gbn = GaussianBayesNet(reversed.begin(), reversed.end());
-#endif
 
-  // Return the optimized bayes net.
+  // Return the optimized bayes net result.
-  return gbn.optimize();
+  return result;
 }
 
 }  // namespace gtsam